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mednet 1.3.1

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mednet 1.3.1

Installation
Usage
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Baselines and Pre-trained Models
Data model
Databases
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- Classification
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- Semantic Segmentation
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  - AV-Drive
  - CHASE-DB1
  - CXR-8
  - Dr. Hagis
  - DRIONS-DB
  - DRISHTI-GS1
  - DRIVE
  - HRF
  - IOSTAR
  - JSRT
  - Montgomery County
  - REFUGE
  - RIM One (r3)
  - Shenzhen Hospital
  - STARE
- Object Detection
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Model Architectures
Command-line Interface
Python API
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- mednet
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  - mednet.data
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    - mednet.data.augmentations
    - mednet.data.classify
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    - mednet.data.datamodule
    - mednet.data.detect
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    - mednet.data.image_utils
    - mednet.data.segment
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    - mednet.data.split
    - mednet.data.typing
  - mednet.engine
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    - mednet.engine.callbacks
    - mednet.engine.classify
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      - mednet.engine.classify.evaluator
      - mednet.engine.classify.predictor
      - mednet.engine.classify.saliency
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        mednet.engine.classify.saliency.completeness
        
        mednet.engine.classify.saliency.generator
        
        mednet.engine.classify.saliency.interpretability
        
        mednet.engine.classify.saliency.utils
        
        mednet.engine.classify.saliency.viewer
    - mednet.engine.detect
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      - mednet.engine.detect.evaluator
      - mednet.engine.detect.predictor
    - mednet.engine.device
    - mednet.engine.loggers
    - mednet.engine.segment
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    - mednet.engine.trainer
    - mednet.engine.uploader
  - mednet.models
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    - mednet.models.classify
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    - mednet.models.detect
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    - mednet.models.losses
    - mednet.models.model
    - mednet.models.normalizer
    - mednet.models.segment
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      - mednet.models.segment.backbones
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        mednet.models.segment.backbones.mobilenetv2
        
        mednet.models.segment.backbones.vgg
      - mednet.models.segment.driu
      - mednet.models.segment.driu_bn
      - mednet.models.segment.driu_od
      - mednet.models.segment.driu_pix
      - mednet.models.segment.hed
      - mednet.models.segment.lwnet
      - mednet.models.segment.m2unet
      - mednet.models.segment.make_layers
      - mednet.models.segment.model
      - mednet.models.segment.unet
    - mednet.models.transforms
    - mednet.models.typing
  - mednet.scripts
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    - mednet.scripts.classify
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      - mednet.scripts.classify.cli
      - mednet.scripts.classify.evaluate
      - mednet.scripts.classify.saliency
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        mednet.scripts.classify.saliency.completeness
        
        mednet.scripts.classify.saliency.generate
        
        mednet.scripts.classify.saliency.interpretability
        
        mednet.scripts.classify.saliency.view
    - mednet.scripts.cli
    - mednet.scripts.click
    - mednet.scripts.config
    - mednet.scripts.database
    - mednet.scripts.detect
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      - mednet.scripts.detect.cli
      - mednet.scripts.detect.evaluate
    - mednet.scripts.experiment
    - mednet.scripts.info
    - mednet.scripts.logging
    - mednet.scripts.predict
    - mednet.scripts.preprocess
    - mednet.scripts.segment
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    - mednet.scripts.train
    - mednet.scripts.train_analysis
    - mednet.scripts.upload
    - mednet.scripts.utils
  - mednet.utils
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Config Modules
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- mednet.config
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  - mednet.config.augmentations
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  - mednet.config.classify
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    - mednet.config.classify.data
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    - mednet.config.classify.models
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  - mednet.config.detect
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    - mednet.config.detect.data
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      - mednet.config.detect.data.cxr8
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        mednet.config.detect.data.cxr8.default
      - mednet.config.detect.data.jsrt
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        mednet.config.detect.data.jsrt.default
      - mednet.config.detect.data.montgomery
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        mednet.config.detect.data.montgomery.default
      - mednet.config.detect.data.shenzhen
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        mednet.config.detect.data.shenzhen.default
    - mednet.config.detect.models
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      - mednet.config.detect.models.faster_rcnn
  - mednet.config.segment
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    - mednet.config.segment.data
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      - mednet.config.segment.data.avdrive
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        mednet.config.segment.data.avdrive.default
      - mednet.config.segment.data.chasedb1
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        mednet.config.segment.data.chasedb1.first_annotator
        
        mednet.config.segment.data.chasedb1.second_annotator
      - mednet.config.segment.data.cxr8
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        mednet.config.segment.data.cxr8.default
      - mednet.config.segment.data.drhagis
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        mednet.config.segment.data.drhagis.default
      - mednet.config.segment.data.drionsdb
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        mednet.config.segment.data.drionsdb.expert1
        
        mednet.config.segment.data.drionsdb.expert2
      - mednet.config.segment.data.drishtigs1
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        mednet.config.segment.data.drishtigs1.optic_cup_all
        
        mednet.config.segment.data.drishtigs1.optic_cup_any
        
        mednet.config.segment.data.drishtigs1.optic_disc_all
        
        mednet.config.segment.data.drishtigs1.optic_disc_any
      - mednet.config.segment.data.drive
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        mednet.config.segment.data.drive.default
        
        mednet.config.segment.data.drive.drive_2nd
      - mednet.config.segment.data.hrf
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        mednet.config.segment.data.hrf.default
      - mednet.config.segment.data.iostar
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        mednet.config.segment.data.iostar.optic_disc
        
        mednet.config.segment.data.iostar.vessel
      - mednet.config.segment.data.jsrt
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        mednet.config.segment.data.jsrt.default
      - mednet.config.segment.data.montgomery
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        mednet.config.segment.data.montgomery.default
      - mednet.config.segment.data.refuge
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        mednet.config.segment.data.refuge.cup
        
        mednet.config.segment.data.refuge.disc
      - mednet.config.segment.data.rimoner3
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        mednet.config.segment.data.rimoner3.cup_exp1
        
        mednet.config.segment.data.rimoner3.cup_exp2
        
        mednet.config.segment.data.rimoner3.disc_exp1
        
        mednet.config.segment.data.rimoner3.disc_exp2
      - mednet.config.segment.data.shenzhen
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        mednet.config.segment.data.shenzhen.default
      - mednet.config.segment.data.stare
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        mednet.config.segment.data.stare.ah
        
        mednet.config.segment.data.stare.vk
    - mednet.config.segment.models
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Getting Involved and Contributing
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mednet.scripts.classify.saliency.generate¶

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