Source code for mednet.models.segment.driu_pix

# SPDX-FileCopyrightText: Copyright © 2023 Idiap Research Institute <contact@idiap.ch>
#
# SPDX-License-Identifier: GPL-3.0-or-later
""":py:mod:`DRIU network architecture <.segment.models.driu>`, with :py:class:`torch.nn.PixelShuffle` instead of ConvTrans2D."""

import logging
import typing

import torch
import torch.nn
import torch.utils.data

from ...data.typing import TransformSequence
from ..losses import SoftJaccardAndBCEWithLogitsLoss
from .backbones.vgg import vgg16_for_segmentation
from .driu import ConcatFuseBlock
from .make_layers import UpsampleCropBlock
from .model import Model

logger = logging.getLogger(__name__)


[docs] class DRIUPIXHead(torch.nn.Module): """DRIUPIX head module. DRIU with pixelshuffle instead of ConvTrans2D. Parameters ---------- in_channels_list : list Number of channels for each feature map that is returned from backbone. """ def __init__(self, in_channels_list): super().__init__() ( in_conv_1_2_16, in_upsample2, in_upsample_4, in_upsample_8, ) = in_channels_list self.conv1_2_16 = torch.nn.Conv2d(in_conv_1_2_16, 16, 3, 1, 1) # Upsample layers self.upsample2 = UpsampleCropBlock(in_upsample2, 16, 4, 2, 0, pixelshuffle=True) self.upsample4 = UpsampleCropBlock( in_upsample_4, 16, 8, 4, 0, pixelshuffle=True ) self.upsample8 = UpsampleCropBlock( in_upsample_8, 16, 16, 8, 0, pixelshuffle=True ) # Concat and Fuse self.concatfuse = ConcatFuseBlock()
[docs] def forward(self, x): hw = x[0] conv1_2_16 = self.conv1_2_16(x[1]) # conv1_2_16 upsample2 = self.upsample2(x[2], hw) # side-multi2-up upsample4 = self.upsample4(x[3], hw) # side-multi3-up upsample8 = self.upsample8(x[4], hw) # side-multi4-up return self.concatfuse(conv1_2_16, upsample2, upsample4, upsample8)
[docs] class DRIUPix(Model): """:py:mod:`DRIU network architecture <.segment.models.driu>`, with :py:class:`torch.nn.PixelShuffle` instead of ConvTrans2D. Parameters ---------- loss_type The loss to be used for training and evaluation. .. warning:: The loss should be set to always return batch averages (as opposed to the batch sum), as our logging system expects it so. loss_arguments Arguments to the loss. optimizer_type The type of optimizer to use for training. optimizer_arguments Arguments to the optimizer after ``params``. scheduler_type The type of scheduler to use for training. scheduler_arguments Arguments to the scheduler after ``params``. model_transforms An optional sequence of torch modules containing transforms to be applied on the input **before** it is fed into the network. augmentation_transforms An optional sequence of torch modules containing transforms to be applied on the input **before** it is fed into the network. pretrained If True, will use VGG16 pretrained weights. """ def __init__( self, loss_type: type[torch.nn.Module] = SoftJaccardAndBCEWithLogitsLoss, loss_arguments: dict[str, typing.Any] | None = None, optimizer_type: type[torch.optim.Optimizer] = torch.optim.Adam, optimizer_arguments: dict[str, typing.Any] | None = None, scheduler_type: type[torch.optim.lr_scheduler.LRScheduler] | None = None, scheduler_arguments: dict[str, typing.Any] | None = None, model_transforms: TransformSequence | None = None, augmentation_transforms: TransformSequence | None = None, pretrained: bool = False, ): super().__init__( name="driu-pix", loss_type=loss_type, loss_arguments=loss_arguments, optimizer_type=optimizer_type, optimizer_arguments=optimizer_arguments, scheduler_type=scheduler_type, scheduler_arguments=scheduler_arguments, model_transforms=model_transforms, augmentation_transforms=augmentation_transforms, num_classes=1, # fixed at current implementation ) if pretrained: from ..normalizer import make_imagenet_normalizer Model.normalizer.fset(self, make_imagenet_normalizer()) # type: ignore[attr-defined] self.backbone = vgg16_for_segmentation( pretrained=pretrained, return_features=[3, 8, 14, 22], ) self.head = DRIUPIXHead([64, 128, 256, 512])
[docs] def forward(self, x): x = self.normalizer(x) x = self.backbone(x) return self.head(x)